HL_6VMI_032

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_032 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.3379

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VMI|1|A|A|2958
6VMI|1|A|G|2959
6VMI|1|A|U|2960
6VMI|1|A|C|2961
6VMI|1|A|C|2962
6VMI|1|A|A|2963
6VMI|1|A|U|2964
6VMI|1|A|A|2965
6VMI|1|A|U|2966

Current chains

Chain A

16s rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain v

Elongation factor G, mitochondrial