HL_6VMI_033

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

6VMI|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_033 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.423

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6VMI|1|A|U|3015
6VMI|1|A|G|3016
6VMI|1|A|C|3017
6VMI|1|A|A|3018
6VMI|1|A|G|3019
6VMI|1|A|C|3020
6VMI|1|A|C|3021
6VMI|1|A|G|3022

Current chains

Chain A

16s rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain v

Elongation factor G, mitochondrial