HL_6VMI_045

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCCACG

Length

6 nucleotides

Bulged bases

6VMI|1|AA|C|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_045 not in the Motif Atlas

Geometric match to HL_8X5V_003

Geometric discrepancy: 0.3798

The information below is about HL_8X5V_003

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6VMI|1|AA|C|804
6VMI|1|AA|C|805
6VMI|1|AA|C|806
6VMI|1|AA|A|807
6VMI|1|AA|C|808
6VMI|1|AA|G|809

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial