HL_6VMI_058
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAGUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 6VMI|1|AA|U|1443, 6VMI|1|AA|U|1448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VMI_058 not in the Motif Atlas
- Geometric match to HL_4V90_032
- Geometric discrepancy: 0.3696
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6VMI|1|AA|G|1440
6VMI|1|AA|A|1441
6VMI|1|AA|G|1442
6VMI|1|AA|U|1443
6VMI|1|AA|A|1444
6VMI|1|AA|G|1445
6VMI|1|AA|A|1446
6VMI|1|AA|G|1447
6VMI|1|AA|U|1448
6VMI|1|AA|G|1449
6VMI|1|AA|C|1450
Current chains
- Chain AA
- 12s rRNA
Nearby chains
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain AH
- 28S ribosomal protein S10, mitochondrial
- Chain AK
- 28S ribosomal protein S14, mitochondrial
- Chain AZ
- 28S ribosomal protein S33, mitochondrial
Coloring options: