HL_6VMI_062
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- ACUUACACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VMI_062 not in the Motif Atlas
- Geometric match to HL_4R4V_001
- Geometric discrepancy: 0.3001
- The information below is about HL_4R4V_001
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Varkud satellite (VS) ribozyme
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6VMI|1|B|A|1630
6VMI|1|B|C|1631
6VMI|1|B|U|1632
6VMI|1|B|U|1633
6VMI|1|B|A|1634
6VMI|1|B|C|1635
6VMI|1|B|A|1636
6VMI|1|B|C|1637
6VMI|1|B|U|1638
Current chains
- Chain B
- tRNAval
Nearby chains
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain P
- Mitochondrial ribosomal protein L18, isoform CRA_b
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain e
- 39S ribosomal protein L46, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
- Chain m
- 39S ribosomal protein L55, mitochondrial
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