HL_6VU3_052

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6VU3|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_052 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0596

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6VU3|1|a|C|487
6VU3|1|a|G|488
6VU3|1|a|G|489
6VU3|1|a|C|490
6VU3|1|a|G|491
6VU3|1|a|A|492
6VU3|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22