HL_6VU3_091

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6VU3|1|a|A|2268, 6VU3|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_091 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.058

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6VU3|1|a|C|2264
6VU3|1|a|U|2265
6VU3|1|a|A|2266
6VU3|1|a|A|2267
6VU3|1|a|A|2268
6VU3|1|a|G|2269
6VU3|1|a|A|2270
6VU3|1|a|G|2271
6VU3|1|a|U|2272
6VU3|1|a|A|2273
6VU3|1|a|A|2274
6VU3|1|a|C|2275
6VU3|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16