HL_6VU3_092

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_092 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1431

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VU3|1|a|G|2303
6VU3|1|a|G|2304
6VU3|1|a|U|2305
6VU3|1|a|C|2306
6VU3|1|a|G|2307
6VU3|1|a|G|2308
6VU3|1|a|A|2309
6VU3|1|a|C|2310
6VU3|1|a|A|2311
6VU3|1|a|U|2312
6VU3|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L5