HL_6VWL_040

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6VWL|1|2|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_040 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1242

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6VWL|1|2|C|305
6VWL|1|2|U|306
6VWL|1|2|G|307
6VWL|1|2|G|308
6VWL|1|2|A|309
6VWL|1|2|A|310
6VWL|1|2|A|311
6VWL|1|2|G|312

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L24