HL_6VWL_046
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUUAGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWL_046 not in the Motif Atlas
- Geometric match to HL_5TBW_012
- Geometric discrepancy: 0.3904
- The information below is about HL_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6VWL|1|2|G|543
6VWL|1|2|C|544
6VWL|1|2|U|545
6VWL|1|2|U|546
6VWL|1|2|A|547
6VWL|1|2|G|548
6VWL|1|2|G|549
6VWL|1|2|C|550
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L13
Coloring options: