HL_6VWL_046

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_046 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3904

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|G|543
6VWL|1|2|C|544
6VWL|1|2|U|545
6VWL|1|2|U|546
6VWL|1|2|A|547
6VWL|1|2|G|548
6VWL|1|2|G|549
6VWL|1|2|C|550

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13