HL_6VWL_059

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

6VWL|1|2|U|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_059 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.5861

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

6VWL|1|2|C|1172
6VWL|1|2|U|1173
6VWL|1|2|U|1174
6VWL|1|2|A|1175
6VWL|1|2|U|1176
6VWL|1|2|G|1177

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15