HL_6VWL_077

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6VWL|1|2|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_077 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3053

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VWL|1|2|G|1910
6VWL|1|2|U|1911
6VWL|1|2|A|1912
6VWL|1|2|A|1913
6VWL|1|2|C|1914
6VWL|1|2|U|1915
6VWL|1|2|A|1916
6VWL|1|2|U|1917
6VWL|1|2|A|1918
6VWL|1|2|A|1919
6VWL|1|2|C|1920

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 4

HIV ribosomal frameshift signal