HL_6VWL_079
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6VWL|1|2|A|2030, 6VWL|1|2|A|2031, 6VWL|1|2|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWL_079 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.0913
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6VWL|1|2|G|2027
6VWL|1|2|U|2028
6VWL|1|2|G|2029
6VWL|1|2|A|2030
6VWL|1|2|A|2031
6VWL|1|2|G|2032
6VWL|1|2|A|2033
6VWL|1|2|U|2034
6VWL|1|2|G|2035
6VWL|1|2|C|2036
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain P
- 50S ribosomal protein L21
- Chain Y
- 50S ribosomal protein L32
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