HL_6VWL_082

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6VWL|1|2|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_082 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1068

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6VWL|1|2|C|2248
6VWL|1|2|U|2249
6VWL|1|2|G|2250
6VWL|1|2|G|2251
6VWL|1|2|G|2252
6VWL|1|2|G|2253
6VWL|1|2|C|2254
6VWL|1|2|G|2255
6VWL|1|2|G|2256

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27