HL_6VWL_083

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6VWL|1|2|A|2268, 6VWL|1|2|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_083 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0933

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|C|2264
6VWL|1|2|U|2265
6VWL|1|2|A|2266
6VWL|1|2|A|2267
6VWL|1|2|A|2268
6VWL|1|2|G|2269
6VWL|1|2|A|2270
6VWL|1|2|G|2271
6VWL|1|2|U|2272
6VWL|1|2|A|2273
6VWL|1|2|A|2274
6VWL|1|2|C|2275
6VWL|1|2|G|2276

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27