HL_6VWM_012

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_012 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1775

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6VWM|1|1|C|522
6VWM|1|1|A|523
6VWM|1|1|G|524
6VWM|1|1|C|525
6VWM|1|1|C|526
6VWM|1|1|G|527

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S12