3D structure

PDB id
6VWM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
6VWM|1|1|U|692
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VWM_014 not in the Motif Atlas
Homologous match to HL_6CZR_086
Geometric discrepancy: 0.1569
The information below is about HL_6CZR_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.4
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
13

Unit IDs

6VWM|1|1|C|689
6VWM|1|1|G|690
6VWM|1|1|G|691
6VWM|1|1|U|692
6VWM|1|1|G|693
6VWM|1|1|A|694
6VWM|1|1|A|695
6VWM|1|1|A|696
6VWM|1|1|U|697
6VWM|1|1|G|698

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain 2
Large subunit ribosomal RNA; LSU rRNA
Chain 4
HIV ribosomal frameshift signal
Chain j
30S ribosomal protein S11
Chain t
30S ribosomal protein S21

Coloring options:


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