HL_6VWM_044

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6VWM|1|2|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_044 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1404

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6VWM|1|2|C|487
6VWM|1|2|G|488
6VWM|1|2|G|489
6VWM|1|2|C|490
6VWM|1|2|G|491
6VWM|1|2|A|492
6VWM|1|2|G|493

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L22