HL_6VWM_049

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

6VWM|1|2|A|643, 6VWM|1|2|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_049 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.5692

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6VWM|1|2|U|641
6VWM|1|2|U|642
6VWM|1|2|A|643
6VWM|1|2|A|644
6VWM|1|2|C|645
6VWM|1|2|U|646
6VWM|1|2|G|647

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain Z

50S ribosomal protein L33