HL_6VWM_054

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_054 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2847

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6VWM|1|2|C|885
6VWM|1|2|A|886
6VWM|1|2|U|887
6VWM|1|2|C|888
6VWM|1|2|C|889
6VWM|1|2|C|890
6VWM|1|2|G|891

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S19