HL_6VWM_072

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6VWM|1|2|A|1780, 6VWM|1|2|U|1781, 6VWM|1|2|U|1782, 6VWM|1|2|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_072 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1421

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6VWM|1|2|U|1777
6VWM|1|2|U|1778
6VWM|1|2|U|1779
6VWM|1|2|A|1780
6VWM|1|2|U|1781
6VWM|1|2|U|1782
6VWM|1|2|A|1783
6VWM|1|2|A|1784
6VWM|1|2|A|1785
6VWM|1|2|A|1786
6VWM|1|2|A|1787

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain AA

50S ribosomal protein L34