HL_6VWM_081

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6VWM|1|2|A|2268, 6VWM|1|2|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_081 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1098

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6VWM|1|2|C|2264
6VWM|1|2|U|2265
6VWM|1|2|A|2266
6VWM|1|2|A|2267
6VWM|1|2|A|2268
6VWM|1|2|G|2269
6VWM|1|2|A|2270
6VWM|1|2|G|2271
6VWM|1|2|U|2272
6VWM|1|2|A|2273
6VWM|1|2|A|2274
6VWM|1|2|C|2275
6VWM|1|2|G|2276

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27