HL_6VWM_101
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWM_101 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.1415
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6VWM|1|5|A|31
6VWM|1|5|U|32
6VWM|1|5|U|33
6VWM|1|5|G|34
6VWM|1|5|A|35
6VWM|1|5|A|36
6VWM|1|5|A|37
6VWM|1|5|A|38
6VWM|1|5|U|39
Current chains
- Chain 5
- tRNAPhe
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- HIV ribosomal frameshift signal
- Chain h
- 30S ribosomal protein S9
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