HL_6VWM_103

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

6VWM|1|1|C|1136, 6VWM|1|1|C|1137, 6VWM|1|1|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_103 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.4438

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6VWM|1|1|G|1134
6VWM|1|1|U|1135
6VWM|1|1|C|1136
6VWM|1|1|C|1137
6VWM|1|1|G|1138
6VWM|1|1|G|1139
6VWM|1|1|C|1140

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S9