HL_6VWN_002

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6VWN|1|1|A|160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_002 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3358

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6VWN|1|1|G|158
6VWN|1|1|G|159
6VWN|1|1|A|160
6VWN|1|1|A|161
6VWN|1|1|A|162
6VWN|1|1|C|163

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain s

30S ribosomal protein S20