6VWN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6VWN_001 | 1/1/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6VWN_002 | 1/1/158:163 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6VWN_003 | 1/1/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_6VWN_004 | 1/1/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_6VWN_005 | 1/1/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6VWN_006 | 1/1/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_6VWN_007 | 1/1/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6VWN_008 | 1/1/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6VWN_009 | 1/1/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6VWN_010 | 1/1/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6VWN_011 | 1/1/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6VWN_012 | 1/1/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6VWN_013 | 1/1/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6VWN_014 | 1/1/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_6VWN_015 | 1/1/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6VWN_016 | 1/1/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6VWN_017 | 1/1/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_6VWN_018 | 1/1/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6VWN_019 | 1/1/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6VWN_020 | 1/1/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6VWN_021 | 1/1/1028:1033 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6VWN_022 | 1/1/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6VWN_023 | 1/1/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_6VWN_103 | 1/1/1132:1142 | No text annotation | ||
| HL_6VWN_024 | 1/1/1134:1141 | No text annotation | ||
| HL_6VWN_025 | 1/1/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6VWN_026 | 1/1/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_6VWN_027 | 1/1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6VWN_028 | 1/1/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6VWN_029 | 1/1/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6VWN_030 | 1/1/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6VWN_031 | 1/2/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_6VWN_032 | 1/2/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6VWN_033 | 1/2/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6VWN_034 | 1/2/137:142 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6VWN_035 | 1/2/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6VWN_036 | 1/2/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_6VWN_037 | 1/2/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6VWN_038 | 1/2/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6VWN_039 | 1/2/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_6VWN_040 | 1/2/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6VWN_041 | 1/2/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6VWN_042 | 1/2/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_6VWN_043 | 1/2/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6VWN_044 | 1/2/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6VWN_105 | 1/2/544:549 | No text annotation | ||
| HL_6VWN_046 | 1/2/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_6VWN_047 | 1/2/611:617 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6VWN_048 | 1/2/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_6VWN_049 | 1/2/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6VWN_050 | 1/2/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6VWN_051 | 1/2/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_6VWN_052 | 1/2/779:785 | UNCG | geometric HL_6JQ6_004 HL_34617.5 | |
| HL_6VWN_053 | 1/2/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6VWN_054 | 1/2/885:891 | No text annotation | ||
| HL_6VWN_055 | 1/2/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_6VWN_056 | 1/2/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_6VWN_057 | 1/2/1172:1177 | No text annotation | ||
| HL_6VWN_058 | 1/2/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_6VWN_106 | 1/2/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_6VWN_060 | 1/2/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6VWN_061 | 1/2/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_6VWN_062 | 1/2/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_6VWN_063 | 1/2/1451:1459 | No text annotation | ||
| HL_6VWN_064 | 1/2/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6VWN_065 | 1/2/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_6VWN_066 | 1/2/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6VWN_067 | 1/2/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6VWN_068 | 1/2/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_6VWN_069 | 1/2/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_6VWN_070 | 1/2/1728:1731 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_6VWN_071 | 1/2/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_6VWN_072 | 1/2/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6VWN_073 | 1/2/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6VWN_074 | 1/2/1868:1873 | No text annotation | ||
| HL_6VWN_075 | 1/2/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6VWN_076 | 1/2/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_6VWN_077 | 1/2/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_6VWN_078 | 1/2/2142:2149 | No text annotation | ||
| HL_6VWN_079 | 1/2/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6VWN_080 | 1/2/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6VWN_081 | 1/2/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6VWN_082 | 1/2/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_6VWN_083 | 1/2/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6VWN_084 | 1/2/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_6VWN_085 | 1/2/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_6VWN_086 | 1/2/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_6VWN_087 | 1/2/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6VWN_088 | 1/2/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_6VWN_089 | 1/2/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6VWN_090 | 1/2/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6VWN_091 | 1/2/2658:2663 | GNRA | geometric HL_7A0S_063 HL_37824.7 | |
| HL_6VWN_092 | 1/2/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6VWN_093 | 1/2/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_6VWN_107 | 1/2/2796:2799 | No text annotation | ||
| HL_6VWN_095 | 1/2/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6VWN_096 | 1/2/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6VWN_097 | 1/3/38:44 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6VWN_098 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_6VWN_099 | 1/4/74:79 | No text annotation | ||
| HL_6VWN_100 | 1/5/13:22 | No text annotation | ||
| HL_6VWN_101 | 1/5/31:39 | tRNA anticodon loop | homologous HL_4V90_033 HL_06059.6 | |
| HL_6VWN_102 | 1/5/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VWN_045 | No text annotation | ||
| HL_6VWN_104 | No text annotation | ||
| HL_6VWN_059 | No text annotation | ||
| HL_6VWN_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6VWN_001 | 1/1/30:32, 1/1/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_6VWN_002 | 1/1/44:45, 1/1/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_6VWN_003 | 1/1/47:52, 1/1/359:361 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6VWN_004 | 1/1/54:56, 1/1/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_6VWN_005 | 1/1/63:66, 1/1/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_6VWN_006 | 1/1/67:69, 1/1/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_6VWN_007 | 1/1/70:73, 1/1/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6VWN_008 | 1/1/75:76, 1/1/93:95 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_6VWN_009 | 1/1/128:131, 1/1/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6VWN_010 | 1/1/132:136, 1/1/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6VWN_011 | 1/1/144:146, 1/1/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_6VWN_012 | 1/1/147:154, 1/1/167:175 | No text annotation | ||
| IL_6VWN_013 | 1/1/203:206, 1/1/213:214 | No text annotation | ||
| IL_6VWN_014 | 1/1/242:247, 1/1/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6VWN_015 | 1/1/249:252, 1/1/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6VWN_016 | 1/1/292:293, 1/1/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6VWN_017 | 1/1/367:369, 1/1/392:393 | Single bulged U | geometric IL_4V9F_074 IL_89505.4 | |
| IL_6VWN_018 | 1/1/371:375, 1/1/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_6VWN_019 | 1/1/375:376, 1/1/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_6VWN_020 | 1/1/409:416, 1/1/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6VWN_021 | 1/1/440:442, 1/1/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6VWN_022 | 1/1/446:450, 1/1/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6VWN_023 | 1/1/450:454, 1/1/479:483 | No text annotation | ||
| IL_6VWN_176 | 1/1/450:455, 1/1/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_6VWN_024 | 1/1/454:455, 1/1/477:479 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6VWN_025 | 1/1/504:511, 1/1/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6VWN_026 | 1/1/515:521, 1/1/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6VWN_027 | 1/1/569:575, 1/1/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6VWN_028 | 1/1/580:584, 1/1/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6VWN_029 | 1/1/594:596, 1/1/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6VWN_030 | 1/1/597:598, 1/1/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6VWN_031 | 1/1/605:612, 1/1/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6VWN_032 | 1/1/654:655, 1/1/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_6VWN_033 | 1/1/659:660, 1/1/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6VWN_034 | 1/1/662:666, 1/1/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6VWN_177 | 1/1/673:677, 1/1/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6VWN_036 | 1/1/684:688, 1/1/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6VWN_037 | 1/1/774:778, 1/1/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6VWN_038 | 1/1/779:783, 1/1/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6VWN_039 | 1/1/887:894, 1/1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6VWN_178 | 1/1/922:923, 1/1/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_6VWN_041 | 1/1/925:927, 1/1/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6VWN_042 | 1/1/953:954, 1/1/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6VWN_043 | 1/1/993:997, 1/1/1044:1045 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_6VWN_044 | 1/1/998:999, 1/1/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6VWN_045 | 1/1/1048:1050, 1/1/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6VWN_046 | 1/1/1051:1056, 1/1/1204:1207 | No text annotation | homologous IL_5J7L_362 IL_49612.1 | |
| IL_6VWN_179 | 1/1/1052:1057, 1/1/1203:1206 | No text annotation | geometric IL_6CZR_365 NA | |
| IL_6VWN_180 | 1/1/1052:1058, 1/1/1199:1206 | No text annotation | geometric IL_4V88_510 NA | |
| IL_6VWN_047 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6VWN_048 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6VWN_049 | 1/1/1061:1063, 1/1/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6VWN_050 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_6VWN_051 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_6VWN_052 | 1/1/1132:1134, 1/1/1141:1142 | Single stack bend | geometric IL_5TBW_004 NA | |
| IL_6VWN_053 | 1/1/1158:1161, 1/1/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_6VWN_054 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6VWN_055 | 1/1/1255:1258, 1/1/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6VWN_056 | 1/1/1259:1263, 1/1/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6VWN_057 | 1/1/1303:1308, 1/1/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_6VWN_058 | 1/1/1399:1401, 1/1/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_6VWN_059 | 1/1/1401:1404, 1/1/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6VWN_060 | 1/1/1405:1409, 1/1/1491:1496 | Partly complementary | homologous IL_6CZR_167 NA | |
| IL_6VWN_061 | 1/1/1412:1414, 1/1/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6VWN_062 | 1/1/1416:1419, 1/1/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6VWN_063 | 1/1/1430:1435, 1/1/1466:1470 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6VWN_064 | 1/1/1440:1442, 1/1/1460:1461 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_6VWN_065 | 1/1/1445:1448, 1/1/1455:1457 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6VWN_066 | 1/2/24:30, 1/2/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_6VWN_067 | 1/2/36:37, 1/2/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_6VWN_068 | 1/2/43:44, 1/2/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_6VWN_181 | 1/2/82:85, 1/2/97:104 | No text annotation | ||
| IL_6VWN_070 | 1/2/183:184, 1/2/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_6VWN_071 | 1/2/188:194, 1/2/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_6VWN_072 | 1/2/239:245, 1/2/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6VWN_073 | 1/2/269:271, 1/2/366:370 | No text annotation | ||
| IL_6VWN_074 | 1/2/274:281, 1/2/359:363 | No text annotation | ||
| IL_6VWN_075 | 1/2/293:295, 1/2/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6VWN_076 | 1/2/481:484, 1/2/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6VWN_077 | 1/2/536:539, 1/2/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6VWN_078 | 1/2/564:566, 1/2/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_6VWN_079 | 1/2/606:610, 1/2/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6VWN_080 | 1/2/672:674, 1/2/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_6VWN_081 | 1/2/674:678, 1/2/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_6VWN_082 | 1/2/697:698, 1/2/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.6 | |
| IL_6VWN_083 | 1/2/702:703, 1/2/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6VWN_084 | 1/2/703:707, 1/2/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6VWN_085 | 1/2/738:740, 1/2/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6VWN_086 | 1/2/775:777, 1/2/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_6VWN_087 | 1/2/844:847, 1/2/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_6VWN_088 | 1/2/847:848, 1/2/930:933 | Multiple bulged bases | geometric IL_5WTK_001 IL_82107.4 | |
| IL_6VWN_089 | 1/2/850:851, 1/2/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6VWN_090 | 1/2/856:862, 1/2/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_6VWN_091 | 1/2/862:863, 1/2/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_6VWN_092 | 1/2/864:868, 1/2/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_6VWN_093 | 1/2/870:872, 1/2/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_6VWN_094 | 1/2/874:879, 1/2/898:903 | No text annotation | ||
| IL_6VWN_095 | 1/2/880:881, 1/2/895:897 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_6VWN_096 | 1/2/994:996, 1/2/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6VWN_097 | 1/2/998:1002, 1/2/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6VWN_098 | 1/2/1004:1011, 1/2/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6VWN_099 | 1/2/1011:1013, 1/2/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_6VWN_100 | 1/2/1018:1024, 1/2/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6VWN_101 | 1/2/1024:1030, 1/2/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6VWN_102 | 1/2/1031:1034, 1/2/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_57744.1 | |
| IL_6VWN_103 | 1/2/1038:1041, 1/2/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6VWN_182 | 1/2/1197:1198, 1/2/1247:1249 | No text annotation | ||
| IL_6VWN_105 | 1/2/1202:1206, 1/2/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6VWN_106 | 1/2/1208:1215, 1/2/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6VWN_107 | 1/2/1262:1269, 1/2/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6VWN_108 | 1/2/1310:1313, 1/2/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
| IL_6VWN_109 | 1/2/1319:1323, 1/2/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_6VWN_110 | 1/2/1351:1355, 1/2/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_6VWN_111 | 1/2/1357:1361, 1/2/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6VWN_112 | 1/2/1415:1416, 1/2/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6VWN_113 | 1/2/1417:1421, 1/2/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6VWN_114 | 1/2/1432:1435, 1/2/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6VWN_115 | 1/2/1437:1440, 1/2/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_6VWN_116 | 1/2/1450:1451, 1/2/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_6VWN_117 | 1/2/1468:1471, 1/2/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6VWN_118 | 1/2/1474:1478, 1/2/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6VWN_119 | 1/2/1481:1482, 1/2/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6VWN_120 | 1/2/1489:1491, 1/2/1499:1500 | Single bulged A | geometric IL_4V9F_064 IL_31462.6 | |
| IL_6VWN_185 | 1/2/1526:1529, 1/2/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6VWN_122 | 1/2/1651:1656, 1/2/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6VWN_123 | 1/2/1663:1665, 1/2/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6VWN_124 | 1/2/1666:1669, 1/2/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6VWN_187 | 1/2/1666:1674, 1/2/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_6VWN_125 | 1/2/1669:1674, 1/2/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_6VWN_126 | 1/2/1686:1691, 1/2/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_6VWN_127 | 1/2/1712:1718, 1/2/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6VWN_128 | 1/2/1720:1725, 1/2/1735:1740 | No text annotation | ||
| IL_6VWN_129 | 1/2/1727:1728, 1/2/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_6VWN_130 | 1/2/1770:1771, 1/2/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_6VWN_131 | 1/2/1798:1804, 1/2/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_6VWN_132 | 1/2/1837:1840, 1/2/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6VWN_133 | 1/2/1841:1842, 1/2/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6VWN_134 | 1/2/1846:1850, 1/2/1892:1894 | No text annotation | ||
| IL_6VWN_188 | 1/2/1851:1860, 1/2/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6VWN_135 | 1/2/1865:1867, 1/2/1874:1877 | No text annotation | ||
| IL_6VWN_136 | 1/2/1933:1934, 1/2/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.4 | |
| IL_6VWN_137 | 1/2/1934:1945, 1/2/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_6VWN_138 | 1/2/2050:2052, 1/2/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_6VWN_139 | 1/2/2054:2056, 1/2/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6VWN_140 | 1/2/2067:2069, 1/2/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6VWN_141 | 1/2/2070:2071, 1/2/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6VWN_142 | 1/2/2081:2083, 1/2/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_6VWN_143 | 1/2/2085:2087, 1/2/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_6VWN_191 | 1/2/2100:2105, 1/2/2184:2189 | No text annotation | ||
| IL_6VWN_145 | 1/2/2108:2122, 1/2/2176:2181 | No text annotation | ||
| IL_6VWN_146 | 1/2/2124:2127, 1/2/2161:2174 | No text annotation | ||
| IL_6VWN_147 | 1/2/2129:2138, 1/2/2153:2159 | No text annotation | ||
| IL_6VWN_148 | 1/2/2202:2204, 1/2/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6VWN_149 | 1/2/2297:2299, 1/2/2317:2321 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_6VWN_150 | 1/2/2350:2353, 1/2/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6VWN_151 | 1/2/2401:2403, 1/2/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_6VWN_152 | 1/2/2454:2455, 1/2/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6VWN_153 | 1/2/2457:2459, 1/2/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.6 | |
| IL_6VWN_154 | 1/2/2459:2461, 1/2/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_6VWN_155 | 1/2/2466:2470, 1/2/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6VWN_156 | 1/2/2507:2508, 1/2/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_6VWN_157 | 1/2/2510:2512, 1/2/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_6VWN_158 | 1/2/2512:2513, 1/2/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6VWN_159 | 1/2/2522:2523, 1/2/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6VWN_160 | 1/2/2591:2592, 1/2/2601:2603 | No text annotation | ||
| IL_6VWN_161 | 1/2/2636:2640, 1/2/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6VWN_162 | 1/2/2652:2658, 1/2/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_6VWN_163 | 1/2/2680:2684, 1/2/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6VWN_164 | 1/2/2687:2691, 1/2/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_6VWN_165 | 1/2/2695:2696, 1/2/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_6VWN_166 | 1/2/2737:2742, 1/2/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
| IL_6VWN_192 | 1/2/2795:2796, 1/2/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_31462.6 | |
| IL_6VWN_167 | 1/2/2806:2811, 1/2/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_6VWN_168 | 1/2/2838:2839, 1/2/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_6VWN_169 | 1/2/2843:2846, 1/2/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6VWN_170 | 1/2/2847:2852, 1/2/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6VWN_171 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.6 | |
| IL_6VWN_172 | 1/3/23:28, 1/3/56:60 | No text annotation | ||
| IL_6VWN_173 | 1/3/28:32, 1/3/50:56 | No text annotation | ||
| IL_6VWN_174 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_6VWN_175 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VWN_035 | No text annotation | ||
| IL_6VWN_040 | Isolated non-canonical cWW with bulges | ||
| IL_6VWN_069 | No text annotation | ||
| IL_6VWN_104 | Isolated cWS basepair | ||
| IL_6VWN_183 | No text annotation | ||
| IL_6VWN_184 | No text annotation | ||
| IL_6VWN_121 | Triple sheared related | ||
| IL_6VWN_186 | No text annotation | ||
| IL_6VWN_144 | No text annotation | ||
| IL_6VWN_189 | No text annotation | ||
| IL_6VWN_190 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6VWN_001 | 1/1/46:47, 1/1/361:367, 1/1/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6VWN_026 | 1/1/580:588, 1/1/651:654, 1/1/754:761 | No text annotation | ||
| J3_6VWN_027 | 1/1/580:588, 1/1/651:655, 1/1/751:761 | No text annotation | ||
| J3_6VWN_002 | 1/1/586:588, 1/1/651:654, 1/1/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6VWN_003 | 1/1/672:673, 1/1/717:725, 1/1/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6VWN_004 | 1/1/826:829, 1/1/857:861, 1/1/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6VWN_028 | 1/1/933:939, 1/1/1344:1350, 1/1/1372:1384 | No text annotation | ||
| J3_6VWN_005 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_6VWN_006 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6VWN_007 | 1/1/990:993, 1/1/1045:1047, 1/1/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_6VWN_029 | 1/1/990:997, 1/1/1044:1047, 1/1/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_6VWN_008 | 1/1/1003:1006, 1/1/1023:1028, 1/1/1033:1037 | No text annotation | ||
| J3_6VWN_009 | 1/1/1063:1068, 1/1/1107:1113, 1/1/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6VWN_030 | 1/1/1073:1074, 1/1/1083:1086, 1/1/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6VWN_011 | 1/1/1116:1118, 1/1/1155:1158, 1/1/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6VWN_031 | 1/1/1116:1118, 1/1/1155:1161, 1/1/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6VWN_012 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6VWN_013 | 1/2/30:31, 1/2/474:481, 1/2/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_6VWN_032 | 1/2/30:31, 1/2/474:484, 1/2/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_6VWN_033 | 1/2/32:35, 1/2/445:461, 1/2/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_6VWN_014 | 1/2/56:57, 1/2/70:76, 1/2/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6VWN_034 | 1/2/297:301, 1/2/316:325, 1/2/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_6VWN_015 | 1/2/683:689, 1/2/773:775, 1/2/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6VWN_016 | 1/2/698:700, 1/2/732:736, 1/2/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6VWN_017 | 1/2/1298:1303, 1/2/1625:1627, 1/2/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6VWN_018 | 1/2/1306:1309, 1/2/1605:1611, 1/2/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_6VWN_019 | 1/2/1344:1349, 1/2/1382:1385, 1/2/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6VWN_035 | 1/2/1424:1429, 1/2/1564:1565, 1/2/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6VWN_020 | 1/2/2091:2093, 1/2/2196:2200, 1/2/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6VWN_036 | 1/2/2282:2284, 1/2/2384:2395, 1/2/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_6VWN_021 | 1/2/2295:2297, 1/2/2321:2323, 1/2/2332:2337 | No text annotation | homologous J3_5J7L_045 J3_61124.2 | |
| J3_6VWN_037 | 1/2/2295:2299, 1/2/2317:2323, 1/2/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6VWN_022 | 1/2/2517:2520, 1/2/2545:2547, 1/2/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_6VWN_023 | 1/2/2789:2791, 1/2/2805:2806, 1/2/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6VWN_024 | 1/2/2812:2815, 1/2/2831:2836, 1/2/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6VWN_025 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_6VWN_001 | 1/1/115:122, 1/1/239:240, 1/1/286:289, 1/1/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6VWN_002 | 1/1/142:144, 1/1/178:184, 1/1/193:198, 1/1/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6VWN_003 | 1/1/569:577, 1/1/764:769, 1/1/810:821, 1/1/879:881 | No text annotation | ||
| J4_6VWN_004 | 1/2/268:269, 1/2/370:375, 1/2/399:406, 1/2/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6VWN_005 | 1/2/601:604, 1/2/624:628, 1/2/635:638, 1/2/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6VWN_006 | 1/2/1270:1276, 1/2/1294:1295, 1/2/1645:1648, 1/2/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6VWN_007 | 1/2/1310:1314, 1/2/1338:1343, 1/2/1404:1405, 1/2/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_6VWN_008 | 1/2/1313:1314, 1/2/1338:1343, 1/2/1404:1405, 1/2/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6VWN_009 | 1/2/1444:1445, 1/2/1466:1467, 1/2/1525:1526, 1/2/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6VWN_010 | 1/2/1772:1776, 1/2/1788:1792, 1/2/1827:1830, 1/2/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6VWN_011 | 1/2/1833:1835, 1/2/1905:1906, 1/2/1924:1933, 1/2/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6VWN_012 | 1/2/2285:2289, 1/2/2343:2347, 1/2/2370:2372, 1/2/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_6VWN_013 | 1/2/2643:2646, 1/2/2674:2676, 1/2/2731:2735, 1/2/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_6VWN_014 | 1/5/7:10, 1/5/25:27, 1/5/43:49, 1/5/65:66 | No text annotation | homologous J4_7UQ6_001 J4_70449.28 | |
| J5_6VWN_001 | 1/1/36:39, 1/1/403:406, 1/1/436:439, 1/1/498:500, 1/1/545:548 | No text annotation | ||
| J5_6VWN_002 | 1/1/58:61, 1/1/106:113, 1/1/314:316, 1/1/337:339, 1/1/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6VWN_003 | 1/2/47:54, 1/2/116:121, 1/2/130:131, 1/2/148:150, 1/2/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6VWN_004 | 1/2/531:533, 1/2/560:564, 1/2/577:579, 1/2/1261:1262, 1/2/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6VWN_005 | 1/2/584:589, 1/2/668:671, 1/2/809:812, 1/2/1195:1196, 1/2/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
| J5_6VWN_006 | 1/2/1674:1682, 1/2/1706:1707, 1/2/1751:1752, 1/2/1756:1764, 1/2/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_6VWN_007 | 1/2/2057:2064, 1/2/2446:2454, 1/2/2498:2507, 1/2/2582:2588, 1/2/2606:2611 | No text annotation | ||
| J5_6VWN_008 | 1/2/2074:2077, 1/2/2243:2246, 1/2/2258:2259, 1/2/2281:2282, 1/2/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_6VWN_001 | 1/2/45:46, 1/2/179:183, 1/2/214:224, 1/2/231:235, 1/2/262:266, 1/2/426:433 | No text annotation | ||
| J6_6VWN_002 | 1/2/2074:2077, 1/2/2243:2246, 1/2/2258:2259, 1/2/2281:2284, 1/2/2384:2395, 1/2/2421:2435 | No text annotation | ||
| J7_6VWN_001 | 1/2/8:15, 1/2/525:531, 1/2/2018:2023, 1/2/2040:2043, 1/2/2625:2630, 1/2/2788:2789, 1/2/2894:2895 | No text annotation | ||
| J7_6VWN_002 | 1/2/817:822, 1/2/835:838, 1/2/940:946, 1/2/971:976, 1/2/987:991, 1/2/1163:1164, 1/2/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VWN_010 | No text annotation |
Coloring options: