HL_6VWN_025

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6VWN|1|1|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_025 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3156

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VWN|1|1|U|1165
6VWN|1|1|G|1166
6VWN|1|1|A|1167
6VWN|1|1|U|1168
6VWN|1|1|A|1169
6VWN|1|1|A|1170
6VWN|1|1|A|1171

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain a

30S ribosomal protein S2

Chain t

30S ribosomal protein S21