3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6VWN|1|2|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VWN_046 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.1664
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6VWN|1|2|U|566
6VWN|1|2|U|567
6VWN|1|2|U|568
6VWN|1|2|U|569
6VWN|1|2|G|570
6VWN|1|2|U|571
6VWN|1|2|A|572
6VWN|1|2|U|573
6VWN|1|2|A|574
6VWN|1|2|A|575

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21
Chain Y
50S ribosomal protein L32

Coloring options:


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