HL_6VWN_047

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6VWN|1|2|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_047 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2946

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|C|611
6VWN|1|2|G|612
6VWN|1|2|A|613
6VWN|1|2|A|614
6VWN|1|2|U|615
6VWN|1|2|A|616
6VWN|1|2|G|617

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4