HL_6VWN_051
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUCGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 6VWN|1|2|C|747, 6VWN|1|2|A|751, 6VWN|1|2|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_051 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1414
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6VWN|1|2|U|744
6VWN|1|2|G|745
6VWN|1|2|U|746
6VWN|1|2|C|747
6VWN|1|2|G|748
6VWN|1|2|A|749
6VWN|1|2|A|750
6VWN|1|2|A|751
6VWN|1|2|A|752
6VWN|1|2|A|753
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L34
- Chain B
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L32
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