HL_6VWN_052
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAAGG
- Length
- 7 nucleotides
- Bulged bases
- 6VWN|1|2|A|781, 6VWN|1|2|G|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_052 not in the Motif Atlas
- Geometric match to HL_6JQ6_004
- Geometric discrepancy: 0.3203
- The information below is about HL_6JQ6_004
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.5
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
6VWN|1|2|U|779
6VWN|1|2|G|780
6VWN|1|2|A|781
6VWN|1|2|A|782
6VWN|1|2|A|783
6VWN|1|2|G|784
6VWN|1|2|G|785
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: