HL_6VWN_053

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6VWN|1|2|U|827, 6VWN|1|2|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_053 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.1008

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6VWN|1|2|U|826
6VWN|1|2|U|827
6VWN|1|2|U|828
6VWN|1|2|A|829
6VWN|1|2|G|830
6VWN|1|2|G|831

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15