HL_6VWN_080

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6VWN|1|2|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_080 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1098

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6VWN|1|2|C|2248
6VWN|1|2|U|2249
6VWN|1|2|G|2250
6VWN|1|2|G|2251
6VWN|1|2|G|2252
6VWN|1|2|G|2253
6VWN|1|2|C|2254
6VWN|1|2|G|2255
6VWN|1|2|G|2256

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27