HL_6VWN_082

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_082 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2939

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VWN|1|2|G|2303
6VWN|1|2|G|2304
6VWN|1|2|U|2305
6VWN|1|2|C|2306
6VWN|1|2|G|2307
6VWN|1|2|G|2308
6VWN|1|2|A|2309
6VWN|1|2|C|2310
6VWN|1|2|A|2311
6VWN|1|2|U|2312
6VWN|1|2|C|2313

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5