HL_6VWN_087
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_087 not in the Motif Atlas
- Homologous match to HL_4WF9_056
- Geometric discrepancy: 0.2974
- The information below is about HL_4WF9_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6VWN|1|2|A|2471
6VWN|1|2|G|2472
6VWN|1|2|U|2473
6VWN|1|2|U|2474
6VWN|1|2|C|2475
6VWN|1|2|A|2476
6VWN|1|2|U|2477
6VWN|1|2|A|2478
6VWN|1|2|U|2479
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 4
- HIV ribosomal frameshift signal
- Chain AC
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
- Chain K
- 50S ribosomal protein L16
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