HL_6VWN_092

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_092 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.1109

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6VWN|1|2|U|2701
6VWN|1|2|G|2702
6VWN|1|2|C|2703
6VWN|1|2|C|2704
6VWN|1|2|A|2705
6VWN|1|2|A|2706

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17