HL_6VWN_095

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6VWN|1|2|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_095 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0918

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VWN|1|2|G|2819
6VWN|1|2|A|2820
6VWN|1|2|A|2821
6VWN|1|2|G|2822
6VWN|1|2|A|2823
6VWN|1|2|C|2824
6VWN|1|2|G|2825
6VWN|1|2|A|2826
6VWN|1|2|C|2827

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain L

50S ribosomal protein L17