HL_6VWN_097

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

6VWN|1|3|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_097 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1527

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6VWN|1|3|C|38
6VWN|1|3|A|39
6VWN|1|3|U|40
6VWN|1|3|G|41
6VWN|1|3|C|42
6VWN|1|3|C|43
6VWN|1|3|G|44

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18