HL_6VWT_002

3D structure

PDB id

6VWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GUUUCUAC

Length

8 nucleotides

Bulged bases

6VWT|1|A|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWT_002 not in the Motif Atlas

Geometric match to HL_4XNR_002

Geometric discrepancy: 0.0831

The information below is about HL_4XNR_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

6VWT|1|A|G|46
6VWT|1|A|U|47
6VWT|1|A|U|48
6VWT|1|A|U|49
6VWT|1|A|C|50
6VWT|1|A|U|51
6VWT|1|A|A|52
6VWT|1|A|C|53

Current chains

Chain A

adenine riboswitch aptamer variant

Nearby chains