HL_6VWT_004

3D structure

PDB id

6VWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

AUGAUAUGGUU

Length

11 nucleotides

Bulged bases

6VWT|1|B|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWT_004 not in the Motif Atlas

Homologous match to HL_1Y26_001

Geometric discrepancy: 0.0918

The information below is about HL_1Y26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35704.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6VWT|1|B|A|30
6VWT|1|B|U|31
6VWT|1|B|G|32
6VWT|1|B|A|33
6VWT|1|B|U|34
6VWT|1|B|A|35
6VWT|1|B|U|36
6VWT|1|B|G|37
6VWT|1|B|G|38
6VWT|1|B|U|39
6VWT|1|B|U|40

Current chains

Chain B

adenine riboswitch aptamer variant

Nearby chains