HL_6VWV_001

3D structure

PDB id

6VWV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAUAUGGUU

Length

11 nucleotides

Bulged bases

6VWV|1|A|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWV_001 not in the Motif Atlas

Homologous match to HL_3LA5_001

Geometric discrepancy: 0.1236

The information below is about HL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35704.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6VWV|1|A|A|30
6VWV|1|A|U|31
6VWV|1|A|G|32
6VWV|1|A|A|33
6VWV|1|A|U|34
6VWV|1|A|A|35
6VWV|1|A|U|36
6VWV|1|A|G|37
6VWV|1|A|G|38
6VWV|1|A|U|39
6VWV|1|A|U|40

Current chains

Chain A

adenine riboswitch aptamer variant

Nearby chains

Chain B

Purine riboswitch