HL_6VYQ_014
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYQ_014 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.0648
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VYQ|1|D|A|320
6VYQ|1|D|A|321
6VYQ|1|D|C|322
6VYQ|1|D|U|323
6VYQ|1|D|G|324
6VYQ|1|D|A|325
6VYQ|1|D|G|326
6VYQ|1|D|A|327
6VYQ|1|D|C|328
6VYQ|1|D|A|329
6VYQ|1|D|C|330
6VYQ|1|D|G|331
6VYQ|1|D|G|332
6VYQ|1|D|U|333
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
- Chain U
- 30S ribosomal protein S16
Coloring options: