HL_6VYQ_068

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYQ_068 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.0724

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6VYQ|1|a|U|1222
6VYQ|1|a|G|1223
6VYQ|1|a|U|1224
6VYQ|1|a|G|1225
6VYQ|1|a|A|1226
6VYQ|1|a|G|1227

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L21

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20