HL_6VYS_091

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6VYS|1|a|A|2268, 6VYS|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYS_091 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.058

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6VYS|1|a|C|2264
6VYS|1|a|U|2265
6VYS|1|a|A|2266
6VYS|1|a|A|2267
6VYS|1|a|A|2268
6VYS|1|a|G|2269
6VYS|1|a|A|2270
6VYS|1|a|G|2271
6VYS|1|a|U|2272
6VYS|1|a|A|2273
6VYS|1|a|A|2274
6VYS|1|a|C|2275
6VYS|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16