3D structure

PDB id
6VYT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VYT_026 not in the Motif Atlas
Homologous match to HL_4LFB_020
Geometric discrepancy: 0.0616
The information below is about HL_4LFB_020
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6VYT|1|D|C|897
6VYT|1|D|G|898
6VYT|1|D|C|899
6VYT|1|D|A|900
6VYT|1|D|A|901
6VYT|1|D|G|902

Current chains

Chain D
16S rRNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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