6VYT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYT_001 | No text annotation | ||
| HL_6VYT_002 | tRNA anticodon loop | ||
| HL_6VYT_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYT_004 | No text annotation | ||
| HL_6VYT_005 | No text annotation | ||
| HL_6VYT_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYT_007 | No text annotation | ||
| HL_6VYT_008 | No text annotation | ||
| HL_6VYT_009 | GNRA | ||
| HL_6VYT_010 | GNRA | ||
| HL_6VYT_109 | No text annotation | ||
| HL_6VYT_011 | UNCG | ||
| HL_6VYT_012 | GNRA related | ||
| HL_6VYT_013 | GNRA | ||
| HL_6VYT_014 | No text annotation | ||
| HL_6VYT_015 | UNCG | ||
| HL_6VYT_016 | GNRA | ||
| HL_6VYT_017 | UNCG | ||
| HL_6VYT_018 | GNRA wlth extra near cWW | ||
| HL_6VYT_019 | No text annotation | ||
| HL_6VYT_020 | GNRA-like with tWH | ||
| HL_6VYT_021 | No text annotation | ||
| HL_6VYT_022 | GNRA | ||
| HL_6VYT_023 | No text annotation | ||
| HL_6VYT_024 | No text annotation | ||
| HL_6VYT_025 | GNRA | ||
| HL_6VYT_026 | GNRA | ||
| HL_6VYT_027 | No text annotation | ||
| HL_6VYT_028 | GNRA | ||
| HL_6VYT_029 | GNRA | ||
| HL_6VYT_030 | T-loop related | ||
| HL_6VYT_110 | No text annotation | ||
| HL_6VYT_031 | No text annotation | ||
| HL_6VYT_032 | GNRA | ||
| HL_6VYT_033 | GNRA | ||
| HL_6VYT_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYT_035 | No text annotation | ||
| HL_6VYT_036 | UNCG | ||
| HL_6VYT_037 | GNRA | ||
| HL_6VYT_038 | No text annotation | ||
| HL_6VYT_039 | No text annotation | ||
| HL_6VYT_040 | No text annotation | ||
| HL_6VYT_041 | UNCG | ||
| HL_6VYT_042 | No text annotation | ||
| HL_6VYT_043 | No text annotation | ||
| HL_6VYT_044 | No text annotation | ||
| HL_6VYT_045 | No text annotation | ||
| HL_6VYT_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VYT_047 | No text annotation | ||
| HL_6VYT_048 | T-loop with unstacked turn | ||
| HL_6VYT_049 | No text annotation | ||
| HL_6VYT_050 | Pseudoknot geometry | ||
| HL_6VYT_051 | GNRA | ||
| HL_6VYT_052 | GNRA | ||
| HL_6VYT_053 | No text annotation | ||
| HL_6VYT_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VYT_055 | No text annotation | ||
| HL_6VYT_056 | GNRA | ||
| HL_6VYT_057 | No text annotation | ||
| HL_6VYT_058 | GNRA wlth tandem sheared | ||
| HL_6VYT_059 | No text annotation | ||
| HL_6VYT_060 | No text annotation | ||
| HL_6VYT_061 | No text annotation | ||
| HL_6VYT_111 | No text annotation | ||
| HL_6VYT_062 | No text annotation | ||
| HL_6VYT_063 | No text annotation | ||
| HL_6VYT_064 | No text annotation | ||
| HL_6VYT_065 | No text annotation | ||
| HL_6VYT_066 | GNRA wlth tandem sheared | ||
| HL_6VYT_067 | No text annotation | ||
| HL_6VYT_068 | GNRA | ||
| HL_6VYT_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VYT_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYT_071 | GNRA | ||
| HL_6VYT_072 | No text annotation | ||
| HL_6VYT_073 | Mini UNCG with extended bulge | ||
| HL_6VYT_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYT_075 | UNCG | ||
| HL_6VYT_076 | Mini UNCG | ||
| HL_6VYT_077 | No text annotation | ||
| HL_6VYT_078 | GNRA | ||
| HL_6VYT_079 | UNCG | ||
| HL_6VYT_112 | No text annotation | ||
| HL_6VYT_080 | No text annotation | ||
| HL_6VYT_081 | No text annotation | ||
| HL_6VYT_082 | No text annotation | ||
| HL_6VYT_083 | GNRA related | ||
| HL_6VYT_084 | GNRA variation | ||
| HL_6VYT_085 | No text annotation | ||
| HL_6VYT_086 | No text annotation | ||
| HL_6VYT_087 | No text annotation | ||
| HL_6VYT_088 | No text annotation | ||
| HL_6VYT_089 | No text annotation | ||
| HL_6VYT_090 | No text annotation | ||
| HL_6VYT_091 | No text annotation | ||
| HL_6VYT_092 | No text annotation | ||
| HL_6VYT_114 | No text annotation | ||
| HL_6VYT_093 | Pseudoknot geometry | ||
| HL_6VYT_094 | GNRA | ||
| HL_6VYT_095 | GNRA | ||
| HL_6VYT_096 | No text annotation | ||
| HL_6VYT_097 | No text annotation | ||
| HL_6VYT_098 | GNRA variation | ||
| HL_6VYT_099 | No text annotation | ||
| HL_6VYT_100 | GNRA | ||
| HL_6VYT_101 | GNRA | ||
| HL_6VYT_102 | Ribsomal LSU H95 | ||
| HL_6VYT_103 | No text annotation | ||
| HL_6VYT_104 | No text annotation | ||
| HL_6VYT_115 | UNCG variation | ||
| HL_6VYT_105 | No text annotation | ||
| HL_6VYT_106 | GNRA | ||
| HL_6VYT_113 | No text annotation | ||
| HL_6VYT_107 | No text annotation | ||
| HL_6VYT_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYT_186 | No text annotation | ||
| IL_6VYT_187 | No text annotation | ||
| IL_6VYT_188 | No text annotation | ||
| IL_6VYT_189 | No text annotation | ||
| IL_6VYT_190 | No text annotation | ||
| IL_6VYT_001 | Single bulged G | ||
| IL_6VYT_002 | Single bulged A | ||
| IL_6VYT_003 | No text annotation | ||
| IL_6VYT_004 | Minor groove platform | ||
| IL_6VYT_005 | Multiple bulged bases | ||
| IL_6VYT_006 | Minor groove platform with extra cWW | ||
| IL_6VYT_007 | Minor groove platform | ||
| IL_6VYT_191 | Single bulged G | ||
| IL_6VYT_008 | Single bulged G, near cWW | ||
| IL_6VYT_009 | Isolated non-canonical cWW pair | ||
| IL_6VYT_010 | Minor groove platform related | ||
| IL_6VYT_011 | Isolated cWH basepair | ||
| IL_6VYT_192 | No text annotation | ||
| IL_6VYT_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYT_013 | No text annotation | ||
| IL_6VYT_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYT_015 | No text annotation | ||
| IL_6VYT_016 | C-loop | ||
| IL_6VYT_017 | Single bulged U | ||
| IL_6VYT_018 | C-loop | ||
| IL_6VYT_019 | Single bulged G | ||
| IL_6VYT_020 | No text annotation | ||
| IL_6VYT_021 | No text annotation | ||
| IL_6VYT_022 | tSH-tHW-tWW | ||
| IL_6VYT_023 | No text annotation | ||
| IL_6VYT_024 | SSU/LSU pseudoknot | ||
| IL_6VYT_025 | Kink-turn related | ||
| IL_6VYT_026 | No text annotation | ||
| IL_6VYT_027 | tSH-tHW-tHS | ||
| IL_6VYT_028 | Major groove platform | ||
| IL_6VYT_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYT_030 | No text annotation | ||
| IL_6VYT_031 | Major groove platform; stack outside cWW | ||
| IL_6VYT_032 | Single stack bend | ||
| IL_6VYT_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYT_034 | No text annotation | ||
| IL_6VYT_035 | Kink-turn | ||
| IL_6VYT_036 | Left turn | ||
| IL_6VYT_037 | tSH-tHW-tHS | ||
| IL_6VYT_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYT_039 | Single bulged A | ||
| IL_6VYT_040 | Single bulged G | ||
| IL_6VYT_041 | Minor groove platform | ||
| IL_6VYT_042 | No text annotation | ||
| IL_6VYT_043 | Minor groove platform | ||
| IL_6VYT_203 | Single stack bend | ||
| IL_6VYT_044 | No text annotation | ||
| IL_6VYT_045 | No text annotation | ||
| IL_6VYT_046 | Single bulged U | ||
| IL_6VYT_047 | Not an internal loop | ||
| IL_6VYT_048 | Isolated cWS basepair | ||
| IL_6VYT_049 | Minor groove platform | ||
| IL_6VYT_050 | Single bulged A | ||
| IL_6VYT_051 | Isolated non-canonical cWW pair | ||
| IL_6VYT_052 | No text annotation | ||
| IL_6VYT_053 | Minor groove platform | ||
| IL_6VYT_054 | No text annotation | ||
| IL_6VYT_055 | No text annotation | ||
| IL_6VYT_056 | 180 degree turn | ||
| IL_6VYT_193 | No text annotation | ||
| IL_6VYT_057 | Double sheared with non-canonical cWW | ||
| IL_6VYT_058 | No text annotation | ||
| IL_6VYT_059 | No text annotation | ||
| IL_6VYT_060 | No text annotation | ||
| IL_6VYT_061 | No text annotation | ||
| IL_6VYT_062 | Isolated non-canonical cWW pair | ||
| IL_6VYT_063 | Double sheared | ||
| IL_6VYT_064 | Triple sheared related | ||
| IL_6VYT_065 | Single bulged A | ||
| IL_6VYT_066 | No text annotation | ||
| IL_6VYT_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYT_068 | Single bulged A | ||
| IL_6VYT_069 | Minor groove platform | ||
| IL_6VYT_070 | No text annotation | ||
| IL_6VYT_071 | Single stack bend | ||
| IL_6VYT_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYT_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYT_074 | No text annotation | ||
| IL_6VYT_075 | No text annotation | ||
| IL_6VYT_076 | No text annotation | ||
| IL_6VYT_077 | No text annotation | ||
| IL_6VYT_078 | Double sheared | ||
| IL_6VYT_079 | Isolated non-canonical cWW pair | ||
| IL_6VYT_080 | AAA cross-strand stack | ||
| IL_6VYT_081 | No text annotation | ||
| IL_6VYT_082 | tHW-tHW cross-strand stack | ||
| IL_6VYT_083 | Single bulged A | ||
| IL_6VYT_084 | Single bulged G | ||
| IL_6VYT_085 | Triple sheared | ||
| IL_6VYT_086 | Major groove platform | ||
| IL_6VYT_087 | Single stack bend | ||
| IL_6VYT_088 | Single stack bend | ||
| IL_6VYT_089 | Multiple bulged bases | ||
| IL_6VYT_090 | 90 degree turn | ||
| IL_6VYT_194 | No text annotation | ||
| IL_6VYT_091 | Stack outside cWW | ||
| IL_6VYT_092 | Single stack bend | ||
| IL_6VYT_195 | No text annotation | ||
| IL_6VYT_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYT_094 | Single bulged G | ||
| IL_6VYT_095 | C-loop with bulged stacked A's | ||
| IL_6VYT_096 | Isolated non-canonical cWW pair | ||
| IL_6VYT_097 | Double sheared with non-canonical cWW | ||
| IL_6VYT_196 | No text annotation | ||
| IL_6VYT_098 | No text annotation | ||
| IL_6VYT_099 | Single bulged C | ||
| IL_6VYT_100 | UAA/GAN | ||
| IL_6VYT_101 | SSU/LSU pseudoknot | ||
| IL_6VYT_102 | Single bulged U | ||
| IL_6VYT_103 | Kink-turn related | ||
| IL_6VYT_104 | No text annotation | ||
| IL_6VYT_105 | Isolated non-canonical cWW pair | ||
| IL_6VYT_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYT_107 | Kink-turn | ||
| IL_6VYT_197 | No text annotation | ||
| IL_6VYT_108 | No text annotation | ||
| IL_6VYT_109 | No text annotation | ||
| IL_6VYT_110 | Isolated cWS basepair | ||
| IL_6VYT_111 | No text annotation | ||
| IL_6VYT_112 | Kink-turn | ||
| IL_6VYT_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYT_114 | Major groove platform; stack outside cWW | ||
| IL_6VYT_115 | C-loop | ||
| IL_6VYT_116 | UAA/GAN | ||
| IL_6VYT_117 | tSH-tHW-tHS | ||
| IL_6VYT_118 | Single stack bend | ||
| IL_6VYT_119 | Single stack bend | ||
| IL_6VYT_198 | No text annotation | ||
| IL_6VYT_120 | No text annotation | ||
| IL_6VYT_121 | UAA/GAN | ||
| IL_6VYT_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYT_123 | tSH-tHW | ||
| IL_6VYT_124 | Single bulged U | ||
| IL_6VYT_125 | No text annotation | ||
| IL_6VYT_126 | tSH-tHW-tHS | ||
| IL_6VYT_127 | No text annotation | ||
| IL_6VYT_202 | 180 degree turn | ||
| IL_6VYT_128 | Single bulged A | ||
| IL_6VYT_129 | UAA/GAN variation | ||
| IL_6VYT_130 | No text annotation | ||
| IL_6VYT_131 | Isolated tWW turn | ||
| IL_6VYT_132 | Major groove platform; stack outside cWW | ||
| IL_6VYT_199 | No text annotation | ||
| IL_6VYT_133 | Intercalated tWH | ||
| IL_6VYT_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYT_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYT_136 | Triple sheared | ||
| IL_6VYT_137 | Single bulged C | ||
| IL_6VYT_138 | Single bulged A | ||
| IL_6VYT_139 | Kink-turn related | ||
| IL_6VYT_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYT_141 | Major groove intercalation | ||
| IL_6VYT_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYT_200 | No text annotation | ||
| IL_6VYT_143 | UAA/GAN related | ||
| IL_6VYT_144 | Bulged stacked bases | ||
| IL_6VYT_145 | No text annotation | ||
| IL_6VYT_146 | Major groove platform | ||
| IL_6VYT_147 | No text annotation | ||
| IL_6VYT_148 | No text annotation | ||
| IL_6VYT_149 | No text annotation | ||
| IL_6VYT_150 | Minor groove platform | ||
| IL_6VYT_151 | Isolated tHS basepair with bulges | ||
| IL_6VYT_152 | Isolated non-canonical cWW pair | ||
| IL_6VYT_153 | Isolated non-canonical cWW pair | ||
| IL_6VYT_154 | Isolated non-canonical cWW pair | ||
| IL_6VYT_155 | Isolated non-canonical cWW pair | ||
| IL_6VYT_156 | No text annotation | ||
| IL_6VYT_201 | No text annotation | ||
| IL_6VYT_157 | Kink-turn | ||
| IL_6VYT_158 | Single bulged U | ||
| IL_6VYT_159 | Double sheared | ||
| IL_6VYT_160 | No text annotation | ||
| IL_6VYT_161 | No text annotation | ||
| IL_6VYT_162 | No text annotation | ||
| IL_6VYT_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYT_164 | Double sheared with non-canonical cWW | ||
| IL_6VYT_165 | No text annotation | ||
| IL_6VYT_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYT_167 | No text annotation | ||
| IL_6VYT_168 | Major groove platform with intercalation | ||
| IL_6VYT_169 | No text annotation | ||
| IL_6VYT_170 | Single bulged A | ||
| IL_6VYT_171 | tSH-tHS-tHW | ||
| IL_6VYT_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYT_173 | C-loop | ||
| IL_6VYT_174 | UAA/GAN related, with intercalation | ||
| IL_6VYT_175 | Multiple bulged bases | ||
| IL_6VYT_176 | UAA/GAN with extra cWW | ||
| IL_6VYT_177 | No text annotation | ||
| IL_6VYT_178 | Major groove intercalation | ||
| IL_6VYT_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYT_180 | tHS double platform | ||
| IL_6VYT_181 | Major groove intercalation | ||
| IL_6VYT_182 | No text annotation | ||
| IL_6VYT_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYT_184 | Symmetric double minor groove platform | ||
| IL_6VYT_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYT_001 | No text annotation | ||
| J3_6VYT_027 | No text annotation | ||
| J3_6VYT_002 | No text annotation | ||
| J3_6VYT_028 | No text annotation | ||
| J3_6VYT_003 | No text annotation | ||
| J3_6VYT_004 | No text annotation | ||
| J3_6VYT_005 | No text annotation | ||
| J3_6VYT_006 | No text annotation | ||
| J3_6VYT_029 | No text annotation | ||
| J3_6VYT_007 | No text annotation | ||
| J3_6VYT_008 | No text annotation | ||
| J3_6VYT_030 | No text annotation | ||
| J3_6VYT_009 | No text annotation | ||
| J3_6VYT_010 | No text annotation | ||
| J3_6VYT_011 | No text annotation | ||
| J3_6VYT_031 | No text annotation | ||
| J3_6VYT_012 | No text annotation | ||
| J3_6VYT_013 | No text annotation | ||
| J3_6VYT_032 | No text annotation | ||
| J3_6VYT_033 | No text annotation | ||
| J3_6VYT_014 | No text annotation | ||
| J3_6VYT_034 | No text annotation | ||
| J3_6VYT_015 | No text annotation | ||
| J3_6VYT_016 | No text annotation | ||
| J3_6VYT_017 | No text annotation | ||
| J3_6VYT_018 | No text annotation | ||
| J3_6VYT_019 | No text annotation | ||
| J3_6VYT_020 | No text annotation | ||
| J3_6VYT_035 | No text annotation | ||
| J3_6VYT_021 | Kink-turn 3-way junction | ||
| J3_6VYT_036 | No text annotation | ||
| J3_6VYT_022 | No text annotation | ||
| J3_6VYT_023 | No text annotation | ||
| J3_6VYT_024 | No text annotation | ||
| J3_6VYT_025 | No text annotation | ||
| J3_6VYT_026 | No text annotation | ||
| J4_6VYT_001 | tRNA junction | ||
| J4_6VYT_002 | tRNA junction | ||
| J4_6VYT_003 | No text annotation | ||
| J4_6VYT_004 | No text annotation | ||
| J4_6VYT_005 | No text annotation | ||
| J4_6VYT_006 | No text annotation | ||
| J4_6VYT_007 | No text annotation | ||
| J4_6VYT_008 | No text annotation | ||
| J4_6VYT_009 | No text annotation | ||
| J4_6VYT_010 | No text annotation | ||
| J4_6VYT_011 | No text annotation | ||
| J4_6VYT_012 | No text annotation | ||
| J4_6VYT_013 | No text annotation | ||
| J4_6VYT_014 | No text annotation | ||
| J4_6VYT_015 | No text annotation | ||
| J5_6VYT_001 | No text annotation | ||
| J5_6VYT_002 | No text annotation | ||
| J5_6VYT_003 | No text annotation | ||
| J5_6VYT_004 | No text annotation | ||
| J5_6VYT_005 | No text annotation | ||
| J5_6VYT_006 | No text annotation | ||
| J5_6VYT_007 | No text annotation | ||
| J6_6VYT_001 | No text annotation | ||
| J7_6VYT_001 | No text annotation | ||
| J7_6VYT_002 | No text annotation |
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