HL_6VYT_031

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

6VYT|1|D|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYT_031 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.1518

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6VYT|1|D|G|1134
6VYT|1|D|U|1135
6VYT|1|D|C|1136
6VYT|1|D|C|1137
6VYT|1|D|G|1138
6VYT|1|D|G|1139
6VYT|1|D|C|1140

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9