HL_6VYT_103

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VYT|1|a|G|2751, 6VYT|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYT_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

6VYT|1|a|C|2745
6VYT|1|a|U|2746
6VYT|1|a|G|2747
6VYT|1|a|A|2748
6VYT|1|a|A|2749
6VYT|1|a|A|2750
6VYT|1|a|G|2751
6VYT|1|a|C|2752
6VYT|1|a|A|2753
6VYT|1|a|U|2754
6VYT|1|a|C|2755
6VYT|1|a|U|2756
6VYT|1|a|A|2757
6VYT|1|a|A|2758
6VYT|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13