HL_6VYU_043

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6VYU|1|a|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_043 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0635

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6VYU|1|a|G|194
6VYU|1|a|A|195
6VYU|1|a|A|196
6VYU|1|a|A|197
6VYU|1|a|C|198
6VYU|1|a|A|199
6VYU|1|a|U|200
6VYU|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain u

50S ribosomal protein L15