6VYU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYU_001 | No text annotation | ||
| HL_6VYU_002 | tRNA anticodon loop | ||
| HL_6VYU_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VYU_004 | No text annotation | ||
| HL_6VYU_005 | No text annotation | ||
| HL_6VYU_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VYU_007 | No text annotation | ||
| HL_6VYU_008 | No text annotation | ||
| HL_6VYU_009 | GNRA | ||
| HL_6VYU_010 | GNRA | ||
| HL_6VYU_109 | No text annotation | ||
| HL_6VYU_011 | No text annotation | ||
| HL_6VYU_012 | GNRA related | ||
| HL_6VYU_013 | GNRA | ||
| HL_6VYU_014 | No text annotation | ||
| HL_6VYU_015 | UNCG | ||
| HL_6VYU_016 | GNRA | ||
| HL_6VYU_017 | UNCG | ||
| HL_6VYU_018 | GNRA wlth extra near cWW | ||
| HL_6VYU_019 | No text annotation | ||
| HL_6VYU_020 | GNRA-like with tWH | ||
| HL_6VYU_021 | No text annotation | ||
| HL_6VYU_022 | GNRA | ||
| HL_6VYU_023 | No text annotation | ||
| HL_6VYU_024 | No text annotation | ||
| HL_6VYU_025 | GNRA | ||
| HL_6VYU_026 | GNRA | ||
| HL_6VYU_027 | No text annotation | ||
| HL_6VYU_028 | GNRA | ||
| HL_6VYU_029 | GNRA | ||
| HL_6VYU_030 | T-loop related | ||
| HL_6VYU_110 | No text annotation | ||
| HL_6VYU_031 | No text annotation | ||
| HL_6VYU_032 | GNRA | ||
| HL_6VYU_033 | GNRA | ||
| HL_6VYU_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VYU_035 | No text annotation | ||
| HL_6VYU_036 | UNCG | ||
| HL_6VYU_037 | GNRA | ||
| HL_6VYU_038 | No text annotation | ||
| HL_6VYU_039 | No text annotation | ||
| HL_6VYU_040 | No text annotation | ||
| HL_6VYU_041 | UNCG | ||
| HL_6VYU_042 | No text annotation | ||
| HL_6VYU_043 | No text annotation | ||
| HL_6VYU_044 | No text annotation | ||
| HL_6VYU_045 | No text annotation | ||
| HL_6VYU_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VYU_047 | No text annotation | ||
| HL_6VYU_048 | T-loop with unstacked turn | ||
| HL_6VYU_049 | No text annotation | ||
| HL_6VYU_050 | Pseudoknot geometry | ||
| HL_6VYU_051 | GNRA | ||
| HL_6VYU_052 | GNRA | ||
| HL_6VYU_053 | No text annotation | ||
| HL_6VYU_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VYU_055 | No text annotation | ||
| HL_6VYU_056 | GNRA | ||
| HL_6VYU_057 | No text annotation | ||
| HL_6VYU_058 | GNRA wlth tandem sheared | ||
| HL_6VYU_059 | No text annotation | ||
| HL_6VYU_060 | No text annotation | ||
| HL_6VYU_061 | No text annotation | ||
| HL_6VYU_111 | No text annotation | ||
| HL_6VYU_062 | No text annotation | ||
| HL_6VYU_063 | No text annotation | ||
| HL_6VYU_064 | No text annotation | ||
| HL_6VYU_065 | No text annotation | ||
| HL_6VYU_066 | GNRA wlth tandem sheared | ||
| HL_6VYU_067 | No text annotation | ||
| HL_6VYU_068 | GNRA | ||
| HL_6VYU_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VYU_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYU_071 | GNRA | ||
| HL_6VYU_072 | No text annotation | ||
| HL_6VYU_073 | Mini UNCG with extended bulge | ||
| HL_6VYU_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VYU_075 | UNCG | ||
| HL_6VYU_076 | Mini UNCG | ||
| HL_6VYU_077 | No text annotation | ||
| HL_6VYU_078 | GNRA | ||
| HL_6VYU_079 | UNCG | ||
| HL_6VYU_112 | No text annotation | ||
| HL_6VYU_080 | No text annotation | ||
| HL_6VYU_081 | No text annotation | ||
| HL_6VYU_082 | No text annotation | ||
| HL_6VYU_083 | GNRA related | ||
| HL_6VYU_084 | GNRA variation | ||
| HL_6VYU_085 | No text annotation | ||
| HL_6VYU_086 | No text annotation | ||
| HL_6VYU_087 | No text annotation | ||
| HL_6VYU_088 | No text annotation | ||
| HL_6VYU_089 | No text annotation | ||
| HL_6VYU_090 | No text annotation | ||
| HL_6VYU_091 | No text annotation | ||
| HL_6VYU_092 | No text annotation | ||
| HL_6VYU_114 | No text annotation | ||
| HL_6VYU_093 | Pseudoknot geometry | ||
| HL_6VYU_094 | GNRA | ||
| HL_6VYU_095 | GNRA | ||
| HL_6VYU_096 | No text annotation | ||
| HL_6VYU_097 | No text annotation | ||
| HL_6VYU_098 | GNRA variation | ||
| HL_6VYU_099 | No text annotation | ||
| HL_6VYU_100 | GNRA | ||
| HL_6VYU_101 | GNRA | ||
| HL_6VYU_102 | Ribsomal LSU H95 | ||
| HL_6VYU_103 | No text annotation | ||
| HL_6VYU_104 | No text annotation | ||
| HL_6VYU_115 | UNCG variation | ||
| HL_6VYU_105 | No text annotation | ||
| HL_6VYU_106 | GNRA | ||
| HL_6VYU_113 | No text annotation | ||
| HL_6VYU_107 | No text annotation | ||
| HL_6VYU_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYU_186 | No text annotation | ||
| IL_6VYU_187 | No text annotation | ||
| IL_6VYU_188 | No text annotation | ||
| IL_6VYU_189 | No text annotation | ||
| IL_6VYU_190 | No text annotation | ||
| IL_6VYU_001 | Single bulged G | ||
| IL_6VYU_002 | Single bulged A | ||
| IL_6VYU_003 | No text annotation | ||
| IL_6VYU_004 | Minor groove platform | ||
| IL_6VYU_005 | Multiple bulged bases | ||
| IL_6VYU_006 | Minor groove platform with extra cWW | ||
| IL_6VYU_007 | Minor groove platform | ||
| IL_6VYU_191 | Single bulged G | ||
| IL_6VYU_008 | Single bulged G, near cWW | ||
| IL_6VYU_009 | Isolated non-canonical cWW pair | ||
| IL_6VYU_010 | Minor groove platform related | ||
| IL_6VYU_011 | Isolated cWH basepair | ||
| IL_6VYU_192 | No text annotation | ||
| IL_6VYU_012 | tWH-tWH-tHW-tHW | ||
| IL_6VYU_013 | No text annotation | ||
| IL_6VYU_014 | Kink-turn with non-sequential stacking | ||
| IL_6VYU_015 | No text annotation | ||
| IL_6VYU_016 | C-loop | ||
| IL_6VYU_017 | Single bulged U | ||
| IL_6VYU_018 | C-loop | ||
| IL_6VYU_019 | Single bulged G | ||
| IL_6VYU_020 | No text annotation | ||
| IL_6VYU_021 | No text annotation | ||
| IL_6VYU_022 | tSH-tHW-tWW | ||
| IL_6VYU_023 | No text annotation | ||
| IL_6VYU_024 | SSU/LSU pseudoknot | ||
| IL_6VYU_025 | Kink-turn related | ||
| IL_6VYU_026 | No text annotation | ||
| IL_6VYU_027 | tSH-tHW-tHS | ||
| IL_6VYU_028 | Major groove platform | ||
| IL_6VYU_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYU_030 | No text annotation | ||
| IL_6VYU_031 | Major groove platform; stack outside cWW | ||
| IL_6VYU_032 | Single stack bend | ||
| IL_6VYU_033 | Tandem non-canonical cWW pairs | ||
| IL_6VYU_034 | No text annotation | ||
| IL_6VYU_035 | Kink-turn | ||
| IL_6VYU_036 | Left turn | ||
| IL_6VYU_037 | tSH-tHW-tHS | ||
| IL_6VYU_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VYU_039 | Single bulged A | ||
| IL_6VYU_040 | Single bulged G | ||
| IL_6VYU_041 | Minor groove platform | ||
| IL_6VYU_042 | No text annotation | ||
| IL_6VYU_043 | Minor groove platform | ||
| IL_6VYU_044 | No text annotation | ||
| IL_6VYU_045 | No text annotation | ||
| IL_6VYU_046 | Single bulged U | ||
| IL_6VYU_047 | No text annotation | ||
| IL_6VYU_048 | Isolated cWS basepair | ||
| IL_6VYU_049 | Minor groove platform | ||
| IL_6VYU_050 | Single bulged U | ||
| IL_6VYU_051 | Isolated non-canonical cWW pair | ||
| IL_6VYU_052 | No text annotation | ||
| IL_6VYU_053 | Minor groove platform | ||
| IL_6VYU_054 | No text annotation | ||
| IL_6VYU_055 | No text annotation | ||
| IL_6VYU_056 | 180 degree turn | ||
| IL_6VYU_193 | No text annotation | ||
| IL_6VYU_057 | Double sheared with non-canonical cWW | ||
| IL_6VYU_058 | No text annotation | ||
| IL_6VYU_059 | No text annotation | ||
| IL_6VYU_060 | No text annotation | ||
| IL_6VYU_061 | Partly complementary | ||
| IL_6VYU_062 | Isolated non-canonical cWW pair | ||
| IL_6VYU_063 | Double sheared | ||
| IL_6VYU_064 | Triple sheared related | ||
| IL_6VYU_065 | Single bulged A | ||
| IL_6VYU_066 | No text annotation | ||
| IL_6VYU_067 | Triple sheared with non-canonical cWW | ||
| IL_6VYU_068 | Single bulged A | ||
| IL_6VYU_069 | Minor groove platform | ||
| IL_6VYU_070 | No text annotation | ||
| IL_6VYU_071 | Single stack bend | ||
| IL_6VYU_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYU_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VYU_074 | No text annotation | ||
| IL_6VYU_075 | No text annotation | ||
| IL_6VYU_076 | No text annotation | ||
| IL_6VYU_077 | No text annotation | ||
| IL_6VYU_078 | Double sheared | ||
| IL_6VYU_079 | Isolated non-canonical cWW pair | ||
| IL_6VYU_080 | AAA cross-strand stack | ||
| IL_6VYU_081 | No text annotation | ||
| IL_6VYU_082 | tHW-tHW cross-strand stack | ||
| IL_6VYU_083 | Single bulged A | ||
| IL_6VYU_084 | Single bulged G | ||
| IL_6VYU_085 | Triple sheared | ||
| IL_6VYU_086 | Major groove platform | ||
| IL_6VYU_087 | Single stack bend | ||
| IL_6VYU_088 | Single stack bend | ||
| IL_6VYU_089 | Multiple bulged bases | ||
| IL_6VYU_090 | 90 degree turn | ||
| IL_6VYU_194 | No text annotation | ||
| IL_6VYU_091 | Stack outside cWW | ||
| IL_6VYU_092 | Single stack bend | ||
| IL_6VYU_195 | No text annotation | ||
| IL_6VYU_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VYU_094 | Single bulged G | ||
| IL_6VYU_095 | C-loop with bulged stacked A's | ||
| IL_6VYU_096 | Isolated non-canonical cWW pair | ||
| IL_6VYU_097 | Double sheared with non-canonical cWW | ||
| IL_6VYU_196 | No text annotation | ||
| IL_6VYU_098 | No text annotation | ||
| IL_6VYU_099 | Single bulged C | ||
| IL_6VYU_100 | UAA/GAN | ||
| IL_6VYU_101 | SSU/LSU pseudoknot | ||
| IL_6VYU_102 | Single bulged U | ||
| IL_6VYU_103 | Kink-turn related | ||
| IL_6VYU_104 | No text annotation | ||
| IL_6VYU_105 | Isolated non-canonical cWW pair | ||
| IL_6VYU_106 | Tandem non-canonical cWW pairs | ||
| IL_6VYU_107 | Kink-turn | ||
| IL_6VYU_197 | No text annotation | ||
| IL_6VYU_108 | No text annotation | ||
| IL_6VYU_109 | No text annotation | ||
| IL_6VYU_110 | Isolated cWS basepair | ||
| IL_6VYU_111 | No text annotation | ||
| IL_6VYU_112 | Kink-turn | ||
| IL_6VYU_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VYU_114 | Major groove platform; stack outside cWW | ||
| IL_6VYU_115 | C-loop | ||
| IL_6VYU_116 | UAA/GAN | ||
| IL_6VYU_117 | tSH-tHW-tHS | ||
| IL_6VYU_118 | Single stack bend | ||
| IL_6VYU_119 | Single stack bend | ||
| IL_6VYU_198 | No text annotation | ||
| IL_6VYU_120 | No text annotation | ||
| IL_6VYU_121 | UAA/GAN | ||
| IL_6VYU_122 | Tandem non-canonical cWW pairs | ||
| IL_6VYU_123 | tSH-tHW | ||
| IL_6VYU_124 | Single bulged U | ||
| IL_6VYU_125 | No text annotation | ||
| IL_6VYU_126 | tSH-tHW-tHS | ||
| IL_6VYU_127 | No text annotation | ||
| IL_6VYU_202 | 180 degree turn | ||
| IL_6VYU_128 | Single bulged A | ||
| IL_6VYU_129 | UAA/GAN variation | ||
| IL_6VYU_130 | No text annotation | ||
| IL_6VYU_131 | Isolated tWW turn | ||
| IL_6VYU_132 | Major groove platform; stack outside cWW | ||
| IL_6VYU_199 | No text annotation | ||
| IL_6VYU_133 | Intercalated tWH | ||
| IL_6VYU_134 | tSH-tSH-tHH-tHS | ||
| IL_6VYU_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VYU_136 | Triple sheared | ||
| IL_6VYU_137 | Single bulged C | ||
| IL_6VYU_138 | Single bulged A | ||
| IL_6VYU_139 | Kink-turn related | ||
| IL_6VYU_140 | Minor groove platform, major groove intercalation | ||
| IL_6VYU_141 | Major groove intercalation | ||
| IL_6VYU_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYU_200 | No text annotation | ||
| IL_6VYU_143 | UAA/GAN related | ||
| IL_6VYU_144 | Bulged stacked bases | ||
| IL_6VYU_145 | No text annotation | ||
| IL_6VYU_146 | Major groove platform | ||
| IL_6VYU_147 | No text annotation | ||
| IL_6VYU_148 | No text annotation | ||
| IL_6VYU_149 | Not an internal loop | ||
| IL_6VYU_150 | Minor groove platform | ||
| IL_6VYU_151 | Isolated tHS basepair with bulges | ||
| IL_6VYU_152 | Isolated non-canonical cWW pair | ||
| IL_6VYU_153 | Isolated non-canonical cWW pair | ||
| IL_6VYU_154 | Isolated non-canonical cWW pair | ||
| IL_6VYU_155 | Isolated non-canonical cWW pair | ||
| IL_6VYU_156 | No text annotation | ||
| IL_6VYU_201 | No text annotation | ||
| IL_6VYU_157 | Kink-turn | ||
| IL_6VYU_158 | Single bulged U | ||
| IL_6VYU_159 | Double sheared | ||
| IL_6VYU_160 | No text annotation | ||
| IL_6VYU_161 | No text annotation | ||
| IL_6VYU_162 | No text annotation | ||
| IL_6VYU_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VYU_164 | Double sheared with non-canonical cWW | ||
| IL_6VYU_165 | No text annotation | ||
| IL_6VYU_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VYU_167 | No text annotation | ||
| IL_6VYU_168 | Major groove platform with intercalation | ||
| IL_6VYU_169 | No text annotation | ||
| IL_6VYU_170 | Single bulged A | ||
| IL_6VYU_171 | tSH-tHS-tHW | ||
| IL_6VYU_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VYU_173 | C-loop | ||
| IL_6VYU_174 | UAA/GAN related, with intercalation | ||
| IL_6VYU_175 | Multiple bulged bases | ||
| IL_6VYU_176 | UAA/GAN with extra cWW | ||
| IL_6VYU_177 | No text annotation | ||
| IL_6VYU_178 | Major groove intercalation | ||
| IL_6VYU_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VYU_180 | tHS double platform | ||
| IL_6VYU_181 | Major groove intercalation | ||
| IL_6VYU_182 | No text annotation | ||
| IL_6VYU_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VYU_184 | Symmetric double minor groove platform | ||
| IL_6VYU_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYU_001 | No text annotation | ||
| J3_6VYU_027 | No text annotation | ||
| J3_6VYU_002 | No text annotation | ||
| J3_6VYU_028 | No text annotation | ||
| J3_6VYU_003 | No text annotation | ||
| J3_6VYU_004 | No text annotation | ||
| J3_6VYU_005 | No text annotation | ||
| J3_6VYU_006 | No text annotation | ||
| J3_6VYU_029 | No text annotation | ||
| J3_6VYU_007 | No text annotation | ||
| J3_6VYU_008 | No text annotation | ||
| J3_6VYU_030 | No text annotation | ||
| J3_6VYU_009 | No text annotation | ||
| J3_6VYU_010 | No text annotation | ||
| J3_6VYU_011 | No text annotation | ||
| J3_6VYU_031 | No text annotation | ||
| J3_6VYU_012 | No text annotation | ||
| J3_6VYU_013 | No text annotation | ||
| J3_6VYU_032 | No text annotation | ||
| J3_6VYU_033 | No text annotation | ||
| J3_6VYU_014 | No text annotation | ||
| J3_6VYU_034 | No text annotation | ||
| J3_6VYU_015 | No text annotation | ||
| J3_6VYU_016 | No text annotation | ||
| J3_6VYU_017 | No text annotation | ||
| J3_6VYU_018 | No text annotation | ||
| J3_6VYU_019 | No text annotation | ||
| J3_6VYU_020 | No text annotation | ||
| J3_6VYU_035 | No text annotation | ||
| J3_6VYU_021 | Kink-turn 3-way junction | ||
| J3_6VYU_036 | No text annotation | ||
| J3_6VYU_022 | No text annotation | ||
| J3_6VYU_023 | No text annotation | ||
| J3_6VYU_024 | No text annotation | ||
| J3_6VYU_025 | No text annotation | ||
| J3_6VYU_026 | No text annotation | ||
| J4_6VYU_001 | tRNA junction | ||
| J4_6VYU_002 | tRNA junction | ||
| J4_6VYU_003 | No text annotation | ||
| J4_6VYU_004 | No text annotation | ||
| J4_6VYU_005 | No text annotation | ||
| J4_6VYU_006 | No text annotation | ||
| J4_6VYU_007 | No text annotation | ||
| J4_6VYU_008 | No text annotation | ||
| J4_6VYU_009 | No text annotation | ||
| J4_6VYU_010 | No text annotation | ||
| J4_6VYU_011 | No text annotation | ||
| J4_6VYU_012 | No text annotation | ||
| J4_6VYU_013 | No text annotation | ||
| J4_6VYU_014 | No text annotation | ||
| J4_6VYU_015 | No text annotation | ||
| J5_6VYU_001 | No text annotation | ||
| J5_6VYU_002 | No text annotation | ||
| J5_6VYU_003 | No text annotation | ||
| J5_6VYU_004 | No text annotation | ||
| J5_6VYU_005 | No text annotation | ||
| J5_6VYU_006 | No text annotation | ||
| J5_6VYU_007 | No text annotation | ||
| J6_6VYU_001 | No text annotation | ||
| J7_6VYU_001 | No text annotation | ||
| J7_6VYU_002 | No text annotation |
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